Implementation of a Pilot Study to Analyze Circulating Tumor DNA in Early-Stage Lung Cancer
DOI:
https://doi.org/10.20344/amp.19487Keywords:
Circulating Tumor DNA, Early Detection of Cancer/methods, High-Throughput Nucleotide Sequencing, Lung Neoplasms, Mutation, Neoplasm StagingAbstract
Introduction: Liquid biopsies based on plasma circulating tumour deoxyribonucleic acid (ctDNA) have shown promise in monitoring lung cancer evolution. The expression of ctDNA across time, its relationship with clinicopathological parameters and its association with lung cancer progression through imaging allow us to weigh how useful ctDNA could be in monitoring surgically resectable lung cancer. The aim of this study was to assess the impact of ctDNA analysis implementation in early-stage lung cancer.
Methods: A cohort of 47 patients was sequentially recruited. Only 34 patients with early-stage lung cancer were included. All patients had a tissue specimen and five blood samples drawn: at the preoperative stage, from the pulmonary vein, at surgical discharge, at the first follow-up and at the last follow-up. All blood samples were evaluated for ctDNA expression.
Results: On average, the maximum yield of ctDNA was obtained in liquid biopsies at the surgical discharge of patients when compared with PO, PV, and F1 (p < 0.0001, p < 0.0001, p < 0.0001 respectively). No statistically significant differences were found when comparing the last follow-up to surgical discharge ctDNA expression (p = 0.851). The correlation between ctDNA concentration according to five-time points and the four clinicopathological characteristics showed that patients younger than 70 years had a statistically significant reduction of the concentration of ctDNA at the preoperative and surgical discharge time point [β = -16 734 (-27 707; - 5760); p = 0.003; β = -21 785 (-38 447; -5123); p = 0.010], as opposed to an increase of the concentration of ctDNA at the pulmonary vein and last follow-up time points [β = 8369 (0.359; 16 378); p = 0.041; β = 34 402 (12 549; 56 254); p = 0.002] all with a confidence level of 95%. In the cases where actionable mutations were identified in tissue biopsies, the expected mutation was found in five out of six patients plasma samples at the pre-operatory time point and in two out of six patients plasma samples at the pulmonary vein time point. Two out of six patients with actionable mutations had disease progression.
Conclusion: The results of this pilot study suggest that the maximum yield of ctDNA is obtained at the surgical discharge of the patients and that the pre-operatory timepoint is the one offering the highest sensitivity for the detection of actionable mutations in ctDNA in early-stage lung cancer.
Downloads
References
Global Burden of Disease Cancer Collaboration, Fitzmaurice C, Allen C, Barber RM, Barregard L, Bhutta ZA, et al. Global, regional, national cancer incidence, mortality, years of life lost, years lived with disability, and disability-adjusted life-years from 29 cancer groups, 1990 to 2017. JAMA Oncol. 2019;5;1749-68.
GBD 2013 Mortality and Causes of Death Collaborators. Global, regional, and national age-sex specific and cause-specific mortality for 24- causes of death, 1990–2013: a systematic analysis for the Global Burden of Disease Study 2013. Lancet. 2015;385:117-71. DOI: https://doi.org/10.1016/S0140-6736(14)61682-2
World Health Organisation, International Agency for Research on Cancer. Globocan 2020. [cited 2022 Dec 17]. Available from: https://gco.iarc.fr/today/data/factsheets/cancers/15-Lung-fact-sheet.pdf.
Bettegowda C, Sausen M, Leary RJ, Kinde I, Wang Y, Agrawal N, et al. Detection of circulating tumor DNA in early and late-stage human malignancies. Sci Transl Med. 2014;6:224ra24.
National Institute for Health and Care Excellence. NICE Clinical Guidelines. 2011 Update. [cited 2017 May 23]. Available from: https://www.ncbi.nlm.nih.gov/pubmed/22855970.
Früh M, Rolland E, Pignon J, Seymour L, Ding K, Tribodet H, et al. Pooled analysis of the effect of age on adjuvant cisplatin-based chemotherapy for completely resected non-small-cell lung cancer. J Clin Oncol. 2008;26:3573-81. DOI: https://doi.org/10.1200/JCO.2008.16.2727
Pignon JP, Tribodet H, Scagliotti GV, Douillard JY, Shepherd FA, Stephens RJ, et al. Lung adjuvant cisplatin evaluation: a pooled analysis by the LACE Collaborative Group. J Clin Oncol. 2008;26:3552-9. DOI: https://doi.org/10.1200/JCO.2007.13.9030
Shieh Y, Bohnenkamp M. Low- dose CT scan for lung cancer screening: clinical and coding considerations. Chest. 2017;152:204-9. DOI: https://doi.org/10.1016/j.chest.2017.03.019
Mandel P, Metais P. Les acides nucléiques du plasma sanguin chez l’homme. C R Seances Soc Biol Fil. 1948;142:241-3.
Gale D, Heider K, Ruiz-Valdepenas A, Hackinger S, Perry M, Marsico G, et al. Residual ctDNA after treatment predicts early relapse in patients with early-stage non-small cell lung cancer. 2022;33:500-10. DOI: https://doi.org/10.1016/j.annonc.2022.02.007
Hassanein M, Callison JC, Callaway-Lane C, Aldrich MC, Grogan EL, Massion PP, et al. The state of molecular biomarkers for the early detection of lung cancer. Cancer Prev Res. 2012;5:992-1006. DOI: https://doi.org/10.1158/1940-6207.CAPR-11-0441
Teixeira MR, Oliveira J, Borralho P, Fernandes OG, Almodovar T, Fernandes I, et al. Portuguese consensus recommendations for next-generation sequencing of lung cancer, rare tumors, and cancers of unknown primary origin in clinical practice. Acta Med Port. 2022;35:677-90. DOI: https://doi.org/10.20344/amp.17680
Diaz IM, Nocon A, Mehnert DH, Fredebohm J, Diehl F, Holtrup F, et al. Performance of streck cfDNA blood collection tubes for liquid biopsy testing. PLoS ONE. 2016;11:e0166354. DOI: https://doi.org/10.1371/journal.pone.0166354
Parpart-Li S, Bartlett B, Popoli M, Adleff V, Tucker L, Steinberg R, et al. The effect of preservative and temperature on the analysis of circulating tumor DNA. Clin Cancer Res. 2016;23:2471-7. DOI: https://doi.org/10.1158/1078-0432.CCR-16-1691
Toro PV, Erlanger B, Beaver JA, Cochran RL, VanDenBerg DA, Yakim E, et al. Comparison of cell stabilizing blood collection tubes for circulating plasma tumor DNA. Clin Biochem. 2015;48:993-8. DOI: https://doi.org/10.1016/j.clinbiochem.2015.07.097
Swinkels DW, Wiegerinck E, Steegers EA, Kok JK. Effects of blood-processing protocols on cell-free DNA quantification in plasma. Clin Chem. 2003;49:525-6. DOI: https://doi.org/10.1373/49.3.525
El Messaoudi S, Rolet F, Mouliere F, Thierry AR. Circulating cell free DNA: preanalytical considerations. Clin Chim Acta. 2013;424:222-30. DOI: https://doi.org/10.1016/j.cca.2013.05.022
Crowley E, Nicolantonio F, Loupakis F, Bardelli A. Liquid biopsy: monitoring cancer-genetics in the blood. Nat Rev Clin Oncol. 2013;10:472-84. DOI: https://doi.org/10.1038/nrclinonc.2013.110
Veldore VH, Choughule A, Routhu T, Mandloi N, Noronha V, Amit Joshi A, et al. Validation of liquid biopsy: plasma cell-free DNA testing in clinical management of advanced non-small cell lung cancer. Lung Cancer. 2018;9:1-11. DOI: https://doi.org/10.2147/LCTT.S147841
Gale D, Lawson AJ, Howarth K, Madi M, Durham B, Smalley S, et al. Development of a highly sensitive liquid biopsy platform to detect clinically relevant cancer mutations at low allele fractions in cell-free DNA. PLoS One. 2018;13:e0194630. DOI: https://doi.org/10.1371/journal.pone.0194630
Abbosh C, Birkbak NJ, Wilson GA, Jamal-Hanjani M, Constantin T, Salari R, et al. Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution. Nature. 2017;545:446-51. DOI: https://doi.org/10.1038/nature22364
Chaudhuri AA, Chabon JJ, Lovejoy AF, Newman AM, Stehr H, Azad TD, et al. Early detection of molecular residual disease in localized lung cancer by circulating tumor DNA profiling. Cancer Discov. 2017;7:1394-403. DOI: https://doi.org/10.1158/2159-8290.CD-17-0716
Li N, Wang BX, Li J, Shao Y, Li MT, Li JJ, et al. Perioperative circulating tumor DNA as a potential prognostic marker for operable stage i to iiia non–small cell lung cancer. Cancer. 2022;128:708-18. DOI: https://doi.org/10.1002/cncr.33985
Zhang JT, Liu SY, Gao W, Liu SM, Yan HH, Ji L, et al. Longitudinal undetectable molecular residual disease defines potentially cured population in localized non–small cell lung cancer. Cancer Discov. 2022;12:1690-701. DOI: https://doi.org/10.1158/2159-8290.CD-21-1486
de Groot PM, Wu CC, Carter BW, Munden RF. The epidemiology of lung cancer. Transl Lung Cancer Res. 2018;7:220-33. DOI: https://doi.org/10.21037/tlcr.2018.05.06
Torre LA, Siegel RL, Jemal A. Lung cancer statistics. Adv Exp Med Biol. 2016;893:1-19. DOI: https://doi.org/10.1007/978-3-319-24223-1_1
Espiga de Macedo J, Manuela Machado M, Pereira MD, Machado FV, Amaral M. Will genetic testing be the answer to the definition of treatments in the era of precision therapies? Br J Cancer Res. 2020;3:1. DOI: https://doi.org/10.31488/bjcr.145
Li M, Hou X, Lin S, Zheng L, Liang J, Chen J, et al. Efficacy of adjuvant EGFR inhibitors and impact of clinical factors in resected EGFR-mutated non-small-cell lung cancer: a meta-analysis. Future Oncology. 2022;18:1159-69. DOI: https://doi.org/10.2217/fon-2021-0934
Moding EJ, Liu Y, Nabet BY, Chabon JJ, Chaudhuri AA, Hui AB, et al. Circulating tumour DNA dynamics predict benefit from consolidation immunotherapy in locally advanced non-small-cell lung cancer. Nat Cancer. 2020;1:176-83. DOI: https://doi.org/10.1038/s43018-019-0011-0
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2023 Acta Médica Portuguesa
This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.
All the articles published in the AMP are open access and comply with the requirements of funding agencies or academic institutions. The AMP is governed by the terms of the Creative Commons ‘Attribution – Non-Commercial Use - (CC-BY-NC)’ license, regarding the use by third parties.
It is the author’s responsibility to obtain approval for the reproduction of figures, tables, etc. from other publications.
Upon acceptance of an article for publication, the authors will be asked to complete the ICMJE “Copyright Liability and Copyright Sharing Statement “(http://www.actamedicaportuguesa.com/info/AMP-NormasPublicacao.pdf) and the “Declaration of Potential Conflicts of Interest” (http:// www.icmje.org/conflicts-of-interest). An e-mail will be sent to the corresponding author to acknowledge receipt of the manuscript.
After publication, the authors are authorised to make their articles available in repositories of their institutions of origin, as long as they always mention where they were published and according to the Creative Commons license.